Journal of Microbiology

Full articles

Rubrivirga aquatilis sp. nov. and Rubrivirga halophila sp. nov., isolated from Korean coastal surface seawater: Jisoo Han, Yeonjung Lim, Mirae Kim, Jang-Cheon Cho; J. Microbiol. 2025;63(8):e2504017. Published online August 13, 2025; DOI: https://doi.org/10.71150/jm.2504017

1,084 View
44 Download

Abstract PDF Supplementary Material: Two Gram-stain-negative, obligately aerobic, non-motile, short rod-shaped bacteria, designated IMCC43871^T and IMCC45206^T, were isolated from coastal surface seawater collected from the Yellow Sea and the South Sea of Korea, respectively. The two strains shared 99.2% 16S rRNA gene sequence similarity with each other and exhibited ≤ 98.4% similarity to three described Rubrivirga species. Average nucleotide identity (ANI) and digital DNA–DNA hybridization (dDDH) values between IMCC43871^T and IMCC45206^T were 88.5% and 36.3%, respectively, confirming that they represent two distinct species. Their ANI (≤ 77.7%) and dDDH (≤ 21.4%) values relative to the type strains of the genus Rubrivirga further supported the recognition of strains IMCC43871^T and IMCC45206^T as two novel species within the genus. The complete genomes of IMCC43871^T (4.17 Mb, 71.8% G + C content) and IMCC45206^T (4.17 Mb, 72.8% G + C content) fall within the known genomic range of the genus. Cellular fatty acid, quinone, and polar lipid profiles were consistent with the chemotaxonomic features of the genus Rubrivirga, supporting their affiliation with the genus. Based on phylogenetic, genomic, and phenotypic evidence, strains IMCC43871^T and IMCC45206^T are proposed as two novel species, Rubrivirga aquatilis sp. nov. and Rubrivirga halophila sp. nov., respectively. The type strains are IMCC43871^T (= KCTC 102072^T = NBRC 116463^T) and IMCC45206^T (= KCTC 92925^T = NBRC 116172^T = CCTCC AB 2023136^T).

Haloimpatiens sporogenes sp. nov. and Haloimpatiens myeolchijeotgali sp. nov., anaerobic bacteria isolated from Myeolchi-jeot, a traditional Korean fermented anchovy: Yu Jeong Lee, Byung Hee Chun; J. Microbiol. 2025;63(7):e2504009. Published online July 31, 2025; DOI: https://doi.org/10.71150/jm.2504009

1,700 View
43 Download

Abstract PDF Supplementary Material: Two rod-shaped, Gram-positive, spore-forming, motile, and strictly anaerobic bacteria, FM7315^T and FM7330^T were isolated from Myeolchi-jeot, a traditional Korean fermented anchovy. Phylogenetic and phylogenomic analyses based on the 16S rRNA gene and genome sequences revealed that strains FM7315^T and FM7330^T represent novel species within the genus Haloimpatiens. The genome sizes of strains FM7315^T and FM7330^T were 3,052,517 bp and 4,194,114 bp, respectively, with G + C contents of 29.7 mol% and 28.0 mol%, respectively. Strain FM7315^T exhibited growth at 20–37°C, 0–2% NaCl, and pH range of 5.0–8.0, whereas strain FM7330^T grew at 25–45°C, 0–4% NaCl, and pH range of 5.0–9.0. Strain FM7315^T contains C_14:0, C_16:0, C_18:1 ω9c, Summed Feature 3 (C_16:1 ω7c/C_16:1 ω6c), and Summed Feature 8 (C_18:1 ω7c/C_18:1 ω6c) as major fatty acids, along with diphosphatidylglycerol, phosphatidylglycerol, glycolipid, two aminophospholipids, and five unidentified lipids. Strain FM7330^T contains C_16:0, C_17:1 ω8c, and C_18:1 ω9c as major fatty acids, along with diphosphatidylglycerol, two phosphatidylglycerols, four aminophospholipids, and six unidentified lipids. Based on their phenotypic, chemotaxonomic, and molecular characteristics, strains FM7315^T and FM7330^T represent two novel species of the genus Haloimpatiens, for which the names Haloimpatiens sporogenes sp. nov. (FM7315^T = KCTC 25939^T = JCM 37574^T) and Haloimpatiens myeolchijeotgali sp. nov. (FM7330^T = KCTC 25938^T = JCM 37575^T) have been proposed.

Journal Articles

Genomic Characterization and Comparative Analysis of Streptococcus zhangguiae sp. nov. Isolated from the Respiratory Tract of Marmota Himalayana: Caixin Yang, Jiajia Ma, Huimin Zhou, Jing Yang, Ji Pu, Shan Lu, Dong Jin, Liyun Liu, Kui Dong, Jianguo Xu; J. Microbiol. 2024;62(11):951-963. Published online November 4, 2024; DOI: https://doi.org/10.1007/s12275-024-00177-2

235 View
7 Download

Abstract PDF: Two Gram-stain-positive, oxidase-negative, non-motile, facultative anaerobic, α-hemolytic, coccus-shaped bacteria (zg-86^T and zg-70) were isolated from the respiratory tracts of marmots (Marmota Himalayana) on the Qinghai-Tibet Plateau of China. Phylogenetic analysis of the 16S rRNA gene and 545 core genes revealed that these two strains belong to the Streptococcus genus. These strains were most closely related to Streptococcus respiraculi HTS25^T, Streptococcus cuniculi CCUG 65085^T, and Streptococcus marmotae HTS5^T. The average nucleotide identity (ANI) and digital DNA‒DNA hybridization (dDDH) were below the threshold for species delineation. The predominant cellular fatty acids (CFAs) in this novel species were C_16:0, C_18:0, and C_18:1ω9c, whereas the primary polar lipids were phosphatidylglycerol (PG), phosphatidylethanolamine (PE) and an unknown phosphoglycolipid (PGL). The optimal growth conditions for the strains were 37 °C, pH 7.0, and 0.5% (w/v) NaCl on brain-heart infusion (BHI) agar supplemented with 5% defibrinated sheep blood. Comparative genomics analyses revealed the potential pathogenicity of strain zg-86^T through comparisons with suis subclade strains in terms of virulence factors, pathogen-host interactions (PHIs) and mobile genetic factors (MGEs). Based on the phenotypic characteristics and phylogenetic analyses, we propose that these two isolates represent novel species in the genus Streptococcus, for which the names Streptococcus zhangguiae sp. nov. (the type strain zg-86^T=GDMCC 1.1758^T=JCM 34273^T) is proposed.

Saxibacter everestensis gen. nov., sp. nov., A Novel Member of the Family Brevibacteriaceae, Isolated from the North Slope of Mount Everest: Mao Tian, Shiyu Wu, Wei Zhang, Gaosen Zhang, Xue Yu, Yujie Wu, Puchao Jia, Binglin Zhang, Tuo Chen, Guangxiu Liu; J. Microbiol. 2024;62(4):277-284. Published online March 6, 2024; DOI: https://doi.org/10.1007/s12275-024-00108-1

252 View
10 Download

Abstract PDF: We isolated and analyzed a novel, Gram-stain-positive, aerobic, rod-shaped, non-motile actinobacterium, designated as strain ZFBP1038(T), from rock sampled on the north slope of Mount Everest. The growth requirements of this strain were 10-37 °C, pH 4-10, and 0-6% (w/v) NaCl. The sole respiratory quinone was MK-9, and the major fatty acids were anteiso-C(15:0) and iso-C(17:0). Peptidoglycan containing meso-diaminopimelic acid, ribose, and glucose were the major cell wall sugars, while polar lipids included diphosphatidyl glycerol, phosphatidyl glycerol, an unidentified phospholipid, and an unidentified glycolipid. A phylogenetic analysis based on 16S rRNA gene sequences showed that strain ZFBP1038(T) has the highest similarity with Spelaeicoccus albus DSM 26341( T) (96.02%). ZFBP1038(T) formed a distinct monophyletic clade within the family Brevibacteriaceae and was distantly related to the genus Spelaeicoccus. The G + C content of strain ZFBP1038(T) was 63.65 mol% and the genome size was 4.05 Mb. Digital DNA-DNA hybridization, average nucleotide identity, and average amino acid identity values between the genomes of strain ZFBP1038(T) and representative reference strains were 19.3-25.2, 68.0-71.0, and 52.8-60.1%, respectively. Phylogenetic, phenotypic, and chemotaxonomic characteristics as well as comparative genome analyses suggested that strain ZFBP1038(T) represents a novel species of a new genus, for which the name Saxibacter gen. nov., sp. nov. was assigned with the type strain Saxibacter everestensis ZFBP1038(T) (= EE 014( T) = GDMCC 1.3024( T) = JCM 35335( T)).

Structural and Functional Analyses of the Flavoprotein Disulfide Reductase FN0820 of Fusobacterium nucleatum: Hyunwoo Shin , Yeongjin Baek , Dukwon Lee , Yongbin Xu , Yonghoon Kwon , Inseong Jo , Nam-Chul Ha; J. Microbiol. 2023;61(12):1033-1041. Published online December 20, 2023; DOI: https://doi.org/10.1007/s12275-023-00095-9

286 View
0 Download
1 Web of Science
1 Crossref

Abstract PDF

Escherichia coli RclA and Staphylococcus aureus MerA are part of the Group I flavoprotein disulfide reductase (FDR) family and have been implicated in the contribution to bacterial pathogenesis by defending against the host immune response. Fusobacterium nucleatum is a pathogenic, anaerobic Gram-negative bacterial species commonly found in the human oral cavity and gastrointestinal tract. In this study, we discovered that the F. nucleatum protein FN0820, belonging to the Group I FDR family, exhibited a higher activity of a Cu2+- dependent NADH oxidase than E. coli RclA. Moreover, FN0820 decreased the dissolved oxygen level in the solution with higher NADH oxidase activity. We found that L-tryptophan and its analog 5-hydroxytryptophan inhibit the FN0820 activities of NADH oxidase and the concomitant reduction of oxygen. Our results have implications for developing new treatment strategies against pathogens that defend the host immune response with Group I FDRs.

Citations

Citations to this article as recorded by

The role of metals in hypothiocyanite resistance in Escherichia coli
Michael J. Gray, Laurie E. Comstock
Journal of Bacteriology.2024;[Epub] CrossRef

Regulation of iron homeostasis by peroxide-sensitive CatR, a Fur-family regulator in Streptomyces coelicolor: Yeonbum Kim , Jung-Hye Roe , Joo-Hong Park , Yong-Joon Cho , Kang-Lok Lee; J. Microbiol. 2021;59(12):1083-1091. Published online December 4, 2021; DOI: https://doi.org/10.1007/s12275-021-1457-1

252 View
0 Download
7 Web of Science
5 Crossref

Abstract PDF

CatR, a peroxide-sensing transcriptional repressor of Fur family, can de-repress the transcription of the catA gene encoding catalase upon peroxide stress in Streptomyces coelicolor. Since CatR-regulated genes other than catA and its own gene catR have not been identified in detail, the understanding of the role of CatR regulon is very limited. In this study, we performed transcriptomic analysis to identify genes influenced by both 􀈟􀂊atR mutation and hydrogen peroxide treatment. Through ChIP-qPCR and other analyses, a new consensus sequence was found in CatR-responsive promoter region of catR gene and catA operon for direct regulation. In addition, vtlA (SCO2027) and SCO4983 were identified as new members of the CatR regulon. Expression levels of iron uptake genes were reduced by hydrogen peroxide and a DmdR1 binding sequence was identified in promoters of these genes. The increase in free iron by hydrogen peroxide was thought to suppress the iron import system by DmdR1. A putative exporter protein VtlA regulated by CatR appeared to reduce intracellular iron to prevent oxidative stress. The name vtlA (VIT1-like transporter) was proposed for iron homeostasis related gene SCO2027.

Citations

Citations to this article as recorded by

Structure, Function, and Biosynthesis of Siderophores Produced by Streptomyces Species
Mingxuan Wang, Honglin Li
Journal of Agricultural and Food Chemistry.2025; 73(8): 4425. CrossRef
Autonomous Defense Based on Biogenic Nanoparticle Formation in Daunomycin-Producing Streptomyces
Karel Beneš, Vladislav Čurn, Baveesh Pudhuvai, Jaroslav Motis, Zuzana Michalcová, Andrea Bohatá, Jana Lencová, Jan Bárta, Michael Rost, Andreas Vilcinskas, Vladimír Maťha
Microorganisms.2025; 13(1): 107. CrossRef
Functional versatility of Zur in metal homeostasis, motility, biofilm formation, and stress resistance in Yersinia pseudotuberculosis
Yanchao Gu, Yongde Liu, Wei Mao, Ying Peng, Xiaoru Han, Han Jin, Jingling Xu, Liyang Chang, Yixin Hou, Xihui Shen, Xingyu Liu, Yantao Yang, G. Marcela Rodriguez
Microbiology Spectrum.2024;[Epub] CrossRef
Multi-integrated approach for unraveling small open reading frames potentially associated with secondary metabolism in Streptomyces
Si-Min Fan, Ze-Qi Li, Shi-Zhe Zhang, Liang-Yu Chen, Xi-Ying Wei, Jian Liang, Xin-Qing Zhao, Chun Su, Xiao-Hua Zhang
mSystems.2023;[Epub] CrossRef
The regulatory role of Fur-encoding SCLAV_3199 in iron homeostasis in Streptomyces clavuligerus
Büşra Abanoz-Seçgin, Çiğdem Otur, Sezer Okay, Aslıhan Kurt-Kızıldoğan
Gene.2023; 878: 147594. CrossRef

Review

Raloxifene as a treatment option for viral infections: Subin Hong , JuOae Chang , Kwiwan Jeong , Wonsik Lee; J. Microbiol. 2021;59(2):124-131. Published online February 1, 2021; DOI: https://doi.org/10.1007/s12275-021-0617-7

301 View
0 Download
36 Web of Science
34 Crossref

Abstract PDF

Severe acute respiratory syndrome coronavirus 2 (SARSCoV- 2) has caused corona virus disease 2019 (COVID-19) pandemic and led to mass casualty. Even though much effort has been put into development of vaccine and treatment
methods
to combat COVID-19, no safe and efficient cure has been discovered. Drug repurposing or drug repositioning which is a process of investigating pre-existing drug candidates for novel applications outside their original medical indication can speed up the drug development process. Raloxifene is a selective estrogen receptor modulator (SERM) that has been approved by FDA in 1997 for treatment and prevention of postmenopausal osteoporosis and cancer. Recently, raloxifene demonstrates efficacy in treating viral infections by Ebola, influenza A, and hepatitis C viruses and shows potential for drug repurposing for the treatment of SARS-CoV-2 infection. This review will provide an overview of raloxifene’s mechanism of action as a SERM and present proposed mechanisms of action in treatment of viral infections.

Citations

Citations to this article as recorded by

Overcoming antibiotic resistance: the potential and pitfalls of drug repurposing
Mohammad Abavisani, Alireza Khoshrou, Souzan Eshaghian, Sercan Karav, Amirhossein Sahebkar
Journal of Drug Targeting.2025; 33(3): 341. CrossRef
A Multi-Model Machine Learning Framework for Identifying Raloxifene as a Novel RNA Polymerase Inhibitor from FDA-Approved Drugs
Nhung Thi Hong Van, Minh Tuan Nguyen
Current Issues in Molecular Biology.2025; 47(5): 315. CrossRef
An Integrated Machine Learning Framework for Developing and Validating a Diagnostic Model of Hub Genes Related to Lipid Metabolism in Chronic Rhinosinusitis
Panhui Xiong, Lei Liu, Jingting Pi, Ji Wang, Tao Lu, Xia Ke, Yu Jiang, Yang Shen, Yucheng Yang
Journal of Inflammation Research.2025; Volume 18: 10081. CrossRef
Enhanced oral bioavailability of levormeloxifene and raloxifene by nanoemulsion: simultaneous bioanalysis using liquid chromatography-tandem mass spectrometry
Divya Chauhan, Debalina Maity, Pavan K Yadav, Sachin Vishwakarma, Arun Agarwal, Manish K Chourasia, Jiaur R Gayen
Nanomedicine.2024; 19(12): 1051. CrossRef
RNA splicing factor RBFOX2 is a key factor in the progression of cancer and cardiomyopathy
Jinze Shen, Jianqiao Shentu, Chenming Zhong, Qiankai Huang, Shiwei Duan
Clinical and Translational Medicine.2024;[Epub] CrossRef
Retrospective Analysis of the Effect of Postmenopausal Women Medications on SARS-CoV-2 Infection Progression
Veronica Cocetta, Manuel Zorzi, Stefano Bejor, Maria Candida Cesta, Maria De Pizzol, Jean-Philippe Theurillat, Marcello Allegretti, Andrea Alimonti, Monica Montopoli, Massimo Rugge
Life.2024; 14(9): 1107. CrossRef
A real‑world pharmacovigilance study of raloxifene based on the FDA adverse event reporting system (FAERS)
Hao Liu, Wei Yan, Di Luo, Jinsong Li, Dezhi Yan
Expert Opinion on Drug Safety.2024; : 1. CrossRef
Effectiveness of Selective Estrogen Receptor Modulators in Breast Cancer Therapy: An Update
Agnidipta Das, Kanamarlapudi Joshna Lavanya, Nandini, Kamalpreet Kaur, Vikas Jaitak
Current Medicinal Chemistry.2023; 30(29): 3287. CrossRef
Rapid discovery and classification of inhibitors of coronavirus infection by pseudovirus screen and amplified luminescence proximity homogeneous assay
Kwiwan Jeong, JuOae Chang, Sun-mi Park, Jinhee Kim, Sangeun Jeon, Dong Hwan Kim, Young-Eui Kim, Joo Chan Lee, Somyoung Im, Yejin Jo, Ji-Young Min, Hanbyeul Lee, Minjoo Yeom, Sang-Hyuk Seok, Da In On, Hyuna Noh, Jun-Won Yun, Jun Won Park, Daesub Song, Je K
Antiviral Research.2023; 209: 105473. CrossRef
Synthesis of raloxifene-like quinoxaline derivatives by intramolecular electrophilic cyclization with disulfides
Yuhi Umezu, Eito Horiyama, Yuto Nakai, Masayuki Ninomiya, Atsuyoshi Nishina, Mamoru Koketsu
Bioorganic & Medicinal Chemistry Letters.2023; 93: 129415. CrossRef
The potential renoprotective effect of Raloxifene in renal ischemia-reperfusion injury in a male rat model
Raghad Abdul Hameed Ali, Murooj Altimimi, Najah Rayish Hadi
Journal of Medicine and Life.2023; 16(8): 1274. CrossRef
Multimodal representation learning for predicting molecule–disease relations
Jun Wen, Xiang Zhang, Everett Rush, Vidul A Panickan, Xingyu Li, Tianrun Cai, Doudou Zhou, Yuk-Lam Ho, Lauren Costa, Edmon Begoli, Chuan Hong, J Michael Gaziano, Kelly Cho, Junwei Lu, Katherine P Liao, Marinka Zitnik, Tianxi Cai, Zhiyong Lu
Bioinformatics.2023;[Epub] CrossRef
A Systematic Review of Molecular Pathway Analysis of Drugs for Potential Use in Liver Cancer Treatment
Ruchi Jakhmola Mani, Mridul Anand, Kritie Agarwal, Avi Tiwari, Qazi Amanur Rahman Hashmi, Tumul Vikram Singh, Potshangbam Nongdam, Deepshikha Pande Katare, Angamba Meetei Potshangabam
Drugs and Drug Candidates.2023; 2(2): 210. CrossRef
A phase 2 randomized, double-blinded, placebo-controlled, multicenter trial evaluating the efficacy and safety of raloxifene for patients with mild to moderate COVID-19
Emanuele Nicastri, Franco Marinangeli, Emanuele Pivetta, Elena Torri, Francesco Reggiani, Giuseppe Fiorentino, Laura Scorzolini, Serena Vettori, Carolina Marsiglia, Elizabeth Marie Gavioli, Andrea R. Beccari, Giuseppe Terpolilli, Maria De Pizzol, Giovanni
eClinicalMedicine.2022; 48: 101450. CrossRef
Repurposing the estrogen receptor modulator raloxifene to treat SARS-CoV-2 infection
Marcello Allegretti, Maria Candida Cesta, Mara Zippoli, Andrea Beccari, Carmine Talarico, Flavio Mantelli, Enrico M. Bucci, Laura Scorzolini, Emanuele Nicastri
Cell Death & Differentiation.2022; 29(1): 156. CrossRef
Mechanism of Caspase-1 Inhibition by Four Anti-inflammatory Drugs Used in COVID-19 Treatment
Francesco Caruso, Jens Z. Pedersen, Sandra Incerpi, Sarjit Kaur, Stuart Belli, Radu-Mihai Florea, Miriam Rossi
International Journal of Molecular Sciences.2022; 23(3): 1849. CrossRef
The SARS-CoV-2 spike protein binds and modulates estrogen receptors
Oscar Solis, Andrea R. Beccari, Daniela Iaconis, Carmine Talarico, Camilo A. Ruiz-Bedoya, Jerome C. Nwachukwu, Annamaria Cimini, Vanessa Castelli, Riccardo Bertini, Monica Montopoli, Veronica Cocetta, Stefano Borocci, Ingrid G. Prandi, Kelly Flavahan, Mel
Science Advances.2022;[Epub] CrossRef
Immunomodulatory mechanisms of abatacept: A therapeutic strategy for COVID-19
Dinglong Yang, Hetong Li, Yujing Chen, Weiping Ren, Mingjie Dong, Chunjiang Li, Qiang Jiao
Frontiers in Medicine.2022;[Epub] CrossRef
Characterization of raloxifene as a potential pharmacological agent against SARS-CoV-2 and its variants
Daniela Iaconis, Licia Bordi, Giulia Matusali, Carmine Talarico, Candida Manelfi, Maria Candida Cesta, Mara Zippoli, Francesca Caccuri, Antonella Bugatti, Alberto Zani, Federica Filippini, Laura Scorzolini, Marco Gobbi, Marten Beeg, Arianna Piotti, Monica
Cell Death & Disease.2022;[Epub] CrossRef
Inhibition of KIF20A suppresses the replication of influenza A virus by inhibiting viral entry
Hoyeon Jeon, Younghyun Lim, In-Gu Lee, Dong-In Kim, Keun Pil Kim, So-Hee Hong, Jeongkyu Kim, Youn-Sang Jung, Young-Jin Seo
Journal of Microbiology.2022; 60(11): 1113. CrossRef
Repurposing of Chemotherapeutics to Combat COVID-19
Sisir Nandi, Bhabani Shankar Nayak, Mayank Kumar Khede, Anil Kumar Saxena
Current Topics in Medicinal Chemistry.2022; 22(32): 2660. CrossRef
Raloxifene prevents intracellular invasion of pathogenic bacteria through modulation of cell metabolic pathways
JuOae Chang, Jihoon Kim, Wonsik Lee
Journal of Antimicrobial Chemotherapy.2022; 77(6): 1617. CrossRef
Sex- and gender-related differences linked to SARS-CoV-2 infection among the participants in the web-based EPICOVID19 survey: the hormonal hypothesis
Federica Prinelli, Caterina Trevisan, Marianna Noale, Michela Franchini, Andrea Giacomelli, Liliana Cori, Nithiya Jesuthasan, Raffaele Antonelli Incalzi, Stefania Maggi, Fulvio Adorni
Maturitas.2022; 158: 61. CrossRef
Estrogen and Estrogen Receptor Modulators: Potential Therapeutic Strategies for COVID-19 and Breast Cancer
Shuying Hu, Feiying Yin, Litao Nie, Yuqin Wang, Jian Qin, Jian Chen
Frontiers in Endocrinology.2022;[Epub] CrossRef
[Retracted] Discovering Common Pathophysiological Processes between COVID‐19 and Cystic Fibrosis by Differential Gene Expression Pattern Analysis
Md. Tanvir Hasan, Lway Faisal Abdulrazak, Mohammad Khursheed Alam, Md. Rezwan Islam, Yeasmin Hena Sathi, Fahad Ahmed Al-Zahrani, Kawsar Ahmed, Francis M. Bui, Mohammad Ali Moni, B. D. Parameshachari
BioMed Research International.2022;[Epub] CrossRef
Raloxifene HCl – quercetin co-amorphous system: preparation, characterization, and investigation of its behavior in phosphate buffer
Navya Sree K. S., Swapnil J. Dengale, Srinivas Mutalik, Krishnamurthy Bhat
Drug Development and Industrial Pharmacy.2022; 48(6): 227. CrossRef
Microwave-assisted palladium catalysed C–H acylation with aldehydes: synthesis and diversification of 3-acylthiophenes
Carlos Santiago, Xabier Jiménez-Aberasturi, Eztizen Leicea, Marta G. Lete, Nuria Sotomayor, Esther Lete
Organic & Biomolecular Chemistry.2022; 20(4): 852. CrossRef
Estrogen Receptor Modulators in Viral Infections Such as SARS−CoV−2: Therapeutic Consequences
Nikita Abramenko, Fréderic Vellieux, Petra Tesařová, Zdeněk Kejík, Robert Kaplánek, Lukáš Lacina, Barbora Dvořánková, Daniel Rösel, Jan Brábek, Adam Tesař, Milan Jakubek, Karel Smetana
International Journal of Molecular Sciences.2021; 22(12): 6551. CrossRef
Sex-tailored pharmacology and COVID-19: Next steps towards appropriateness and health equity
Andrea Spini, Valentina Giudice, Vincenzo Brancaleone, Maria Grazia Morgese, Silvia De Francia, Amelia Filippelli, Anna Ruggieri, Marina Ziche, Elena Ortona, Andrea Cignarella, Luigia Trabace
Pharmacological Research.2021; 173: 105848. CrossRef
The role of human C5a as a non-genomic target in corticosteroid therapy for management of severe COVID19
Aurosikha Das, Soumendra Rana
Computational Biology and Chemistry.2021; 92: 107482. CrossRef
Challenges and Opportunities for Osteoporosis Care During the COVID-19 Pandemic
Sara J Cromer, Elaine W Yu
The Journal of Clinical Endocrinology & Metabolism.2021;[Epub] CrossRef
Comprehensive Consensus Analysis of SARS-CoV-2 Drug Repurposing Campaigns
Hazem Mslati, Francesco Gentile, Carl Perez, Artem Cherkasov
Journal of Chemical Information and Modeling.2021; 61(8): 3771. CrossRef
Raloxifene Protects Cisplatin-Induced Renal Injury in Mice via Inhibiting Oxidative Stress
Jian-Hong An, Chun-Yan Li, Chun-Ya Chen, Jian-Bin Wu, Hong Shen
OncoTargets and Therapy.2021; Volume 14: 4879. CrossRef
Vaccination for Coronavirus Disease 2019 (COVID-19) and Relationship to Osteoporosis Care: Current Evidence and Suggested Approaches
Elena Tsourdi, Elaine W. Yu, Suzanne M. Jan de Beur, Matthew T. Drake
Journal of Bone and Mineral Research.2020; 36(6): 1042. CrossRef

Journal Articles

Parahaliea maris sp. nov., isolated from surface seawater and emended description of the genus Parahaliea: Yang Liu , Juan Du , Jun Zhang , Qiliang Lai , Zongze Shao , Honghui Zhu; J. Microbiol. 2020;58(2):92-98. Published online January 29, 2020; DOI: https://doi.org/10.1007/s12275-020-9405-z

258 View
0 Download
8 Web of Science
9 Crossref

Abstract PDF

A Gram-stain-negative, strictly aerobic, short-rod-shaped, and non-motile bacterial strain designated HSLHS9T was isolated from surface seawater collected from the South China Sea. Strain HSLHS9T could grow at 15–41°C (optimum 28°C), at pH 5.0–9.0 (optimum 6.0–7.0), and in 0–7% (w/v) NaCl (optimum 2–3%). Phylogenetic analysis based on 16S rRNA gene sequences indicated that strain HSLHS9T shared high identities with the closely related Parahaliea aestuarii S2-26T (98.6%) and Parahaliea mediterranea 7SM29T (97.8%) and formed a distinct lineage within the genus Parahaliea. Wholegenome sequencing of strain HSLHS9T revealed the size of 4.8 Mbp and DNA G + C content of 61.8 mol%. Strain HSLHS9T shared the digital DNA-DNA hybridization values of 22.4% and 23.0%, and the average nucleotide identities of 79.7% and 79.9%, respectively, with the two type strains above. The predominant cellular fatty acids of the strain were summed feature 8 (C18:1 ω6c and/or C18:1 ω7c), summed feature 3 (C16:1 ω7c and/or C16:1 ω6c), C17:1 ω8c, and C16:0. The sole isoprenoid quinone was identified as Q-8. The polar lipids were phosphatidylglycerol, diphosphatidylglycerol, phosphatidylethanolamine, aminolipid, and two glycolipids. Based on taxonomic data obtained in this study, it is suggested that strain HSLHS9T represents a novel species of the genus Parahaliea, for which the name Parahaliea maris sp. nov. is proposed. The type strain is HSLHS9T (= MCCC 1A06717T = KCTC 52307T). An emended description of the genus Parahaliea is also provided.

Citations

Citations to this article as recorded by

Identification of Roseomonas xinghualingensis sp. nov. isolated from hospital air
Zhiming Kang, Wenjing Lei, Ji Pu, Lijun Zhao, Guowen Min, Yufeng Liu, Wenjuan Chang, Yuqian Gao, Kui Dong, Bin Sun
International Journal of Systematic and Evolutionary Microbiology .2025;[Epub] CrossRef
A comparative analysis of the microbial communities and functional genes of the nitrogen cycling in mangroves of China, Indian and Malaysia
Zhihui Qian, Yuyang Li, Amit Pratush, Jie Kan, Ji-Dong Gu, Tao Peng, Tongwang Huang, Zhong Hu
International Biodeterioration & Biodegradation.2024; 190: 105767. CrossRef
Phylogenomic evaluation of Mangrovimicrobium sediminis gen. nov. sp. nov., the first nitrogen fixing member of the family Halieaceae adapted to mangrove habitat and reclassification of Halioglobus pacificus to Pseudohaliglobus pacificus comb. nov.
Pravin Kumar, Ashish Verma, Pooja Yadav, Joyasree Das, Lalit Kumar, Srinivasan Krishnamurthi
Science of The Total Environment.2024; 933: 172995. CrossRef
Abundant and rare bacteria in anthropogenic estuary: Community co-occurrence and assembly patterns
Ziyue Shi, Lili Ma, Yingying Wang, Jie Liu
Ecological Indicators.2023; 146: 109820. CrossRef
Isolation and characterization of tick-borne Roseomonas haemaphysalidis sp. nov. and rodent-borne Roseomonas marmotae sp. nov.
Wentao Zhu, Juan Zhou, Shan Lu, Jing Yang, Xin-He Lai, Dong Jin, Ji Pu, Yuyuan Huang, Liyun Liu, Zhenjun Li, Jianguo Xu
Journal of Microbiology.2022; 60(2): 137. CrossRef
Sediminihaliea albiluteola gen. nov., sp. nov., a new member of the family Halieaceae, isolated from marine sediment
Shan Jiang, Feng-Bai Lian, You-Yang Sun, Xiao-Kui Zhang, Zong-Jun Du
International Journal of Systematic and Evolutionary Microbiology .2021;[Epub] CrossRef
List of new names and new combinations previously effectively, but not validly, published
Aharon Oren, George M. Garrity
International Journal of Systematic and Evolutionary Microbiology.2020; 70(5): 2960. CrossRef
Notification of changes in taxonomic opinion previously published outside the IJSEM
Aharon Oren, George Garrity
International Journal of Systematic and Evolutionary Microbiology .2020; 70(7): 4061. CrossRef
Aequoribacter fuscus gen. nov., sp. nov., a new member of the family Halieaceae, isolated from coastal seawater
Shan-Hui Li, Jaeho Song, Ilnam Kang, Juchan Hwang, Jang-Cheon Cho
Journal of Microbiology.2020; 58(6): 463. CrossRef

Brevibacillus antibioticus sp. nov., with a broad range of antibacterial activity, isolated from soil in the Nakdong River: Ahyoung Choi , Young Ho Nam , Kiwoon Baek , Eu Jin Chung; J. Microbiol. 2019;57(11):991-996. Published online October 28, 2019; DOI: https://doi.org/10.1007/s12275-019-9325-y

236 View
0 Download
3 Web of Science
2 Crossref

Abstract PDF

A Gram-stain-positive, aerobic, motile, and rod-shaped bacterial strain designated TGS2-1T was isolated from sediment soil in the Nakdong River, Republic of Korea. The optimal growth of strain TGS2-1T was observed at 28°C and pH 7.0 without NaCl supplementation. Strain TGS2-1T revealed antibiosis against various bacteria, including Staphylococcus aureus KCCM 4051, CCARM 3089 (methicillin resistant strains), Enterococcus faecalis KCCM 11814, Escherichia coli KCTC 2443, Candida albicans KACC 7270, and Filobasidium neoformans KCTC 7902. Phylogenetic analyses based on the 16S rRNA gene sequences indicated that strain TGS2-1T belonged to the genus Brevibacillus and shared 93.8–99.7% sequence similarity with Brevibacillus species. Whole-genome sequencing of strain TGS2-1T revealed a genome size of 6.2 Mbp and DNA G + C content of 47.0 mol%. The TGS2-1T genome shared an average nucleotide identity and digital DNA-DNA hybridization of 74.6–93.3% and 18.6–67.1%, respectively, with six related Brevibacillus genomes. The major fatty acid constituents of strain TGS2-1T were anteiso-C15:0 (62.3%) and anteiso-C17:0 (10.8%). Cells of strain TGS2-1T contained diphosphatidylglycerol, phosphatidylglycerol, phosphatidylethanolamine, seven unidentified aminophospholipids, and five unidentified lipids. The isoprenoid quinone detected in the strain was menaquinone-7 (MK-7). Based on data obtained from this polyphasic taxonomic study, strain TGS2-1T represents a novel species belonging to genus Brevibacillus, for which the name B. antibioticus sp. nov. is proposed. The type strain is TGS2-1T (= KCCM 90326T = NBRC 113840T = FBCC-B2501).

Citations

Citations to this article as recorded by

Traditional processing increases biological activities of Dendrobium offificinale Kimura et. Migo in Southeast Yunnan, China
Di Zhou, Ying Zhao, Zhilin Chen, Xiuxiang Yan, Yanqiang Zhao, Lu Gao, Lixin Yang
Scientific Reports.2022;[Epub] CrossRef
Marine Bacterial Secondary Metabolites: A Treasure House for Structurally Unique and Effective Antimicrobial Compounds
Ramanathan Srinivasan, Arunachalam Kannappan, Chunlei Shi, Xiangmin Lin
Marine Drugs.2021; 19(10): 530. CrossRef

Paenibacillus nuruki sp. nov., isolated from Nuruk, a Korean fermentation starter: Soo-Jin Kim , Hayoung Cho , Jae-Hyung Ahn , Hang-Yeon Weon , Jae-Ho Joa , Jeong-Seon Kim , Soon-Wo Kwon; J. Microbiol. 2019;57(10):836-841. Published online June 27, 2019; DOI: https://doi.org/10.1007/s12275-019-9118-3

231 View
0 Download
5 Web of Science
5 Crossref

Abstract PDF

A Gram-stain-positive, rod-shaped, non-endospore-forming, motile by means of peritrichous flagella, facultatively anaerobic bacterium designated TI45-13arT was isolated from Nuruk, a Korean traditional Makgeolli fermentation starter. It grew at 4–35°C (optimum, 28–30°C), pH 5.0–9.0 (optimum, pH 7.0) and NaCl concentrations up to 5% (w/v). Phylogenetic trees generated using 16S rRNA gene sequences revealed that strain TI45-13arT belonged to the genus Paenibacillus and showed the highest sequence similarities with Paenibacillus kyungheensis DCY88T (98.5%), Paenibacillus hordei RH-N24T (98.4%) and Paenibacillus nicotianae YIM h-19T (98.1%). The major fatty acid was anteiso-C15:0. The DNA G+C content was 39.0 mol%, and MK-7 was the predominant isoprenoid quinone. The polar lipids were diphosphatidylglycerol, phosphatidylglycerol, phosphatidylethanolamine, three unidentified glycolipids, and one unidentified aminoglycolipid. The cell-wall peptidoglycan contained meso-diaminopimelic acid. On the basis of polyphasic taxonomy study, it was suggested that strain TI45-13arT represents a novel species within the genus Paenibacillus for which the name Paenibacillus nuruki sp. nov. is proposed. The type strain was TI45-13arT (= KACC 18728T = NBRC 112013T).

Citations

Citations to this article as recorded by

Metagenomic and meta-metabolomic analysis of traditional Korean rice vinegar productions shows a large variability between producers
Louise Vermote, Byung Hee Chun, Shehzad Abid Khan, Luc De Vuyst, Che Ok Jeon, Stefan Weckx
International Journal of Food Microbiology.2025; 440: 111283. CrossRef
Paenibacillus dendrobii sp. nov., an indole-3-acetic acid-producing endophytic bacterium isolated from Dendrobium nobile
Yadong Hu, Hongjie Li, Yaoyi Chen, Qiling Zhang, Shigang Zheng, Dan Rao, Ze Chun, Ruoxi Zhao
International Journal of Systematic and Evolutionary Microbiology .2023;[Epub] CrossRef
Makgeolli - The Traditional Choice of Korean Fermented Beverage from Cereal: An Overview on its Composition and Health Benefits
Ganesh SHIMOGA, Sang-Youn KIM
Food Science and Technology.2022;[Epub] CrossRef
Integrative Metagenomics–Metabolomics for Analyzing the Relationship Between Microorganisms and Non-volatile Profiles of Traditional Xiaoqu
Chi Zhao, Wei Su, Yu Mu, Yingchun Mu, Li Jiang
Frontiers in Microbiology.2021;[Epub] CrossRef
Flaviflexus ciconiae sp. nov., isolated from the faeces of the oriental stork, Ciconia boyciana
Jae-Yun Lee, Woorim Kang, Pil Soo Kim, So-Yeon Lee, Na-Ri Shin, Hojun Sung, June-Young Lee, Ji-Hyun Yun, Yun-Seok Jeong, Jeong Eun Han, Mi-Ja Jung, Dong-Wook Hyun, Hyun Sik Kim, Euon Jung Tak, Jin-Woo Bae
International Journal of Systematic and Evolutionary Microbiology.2020; 70(10): 5439. CrossRef

Fulvimarina endophytica sp. nov., a novel endophytic bacterium isolated from bark of Sonneratia caseolaris: Li Tuo , Xiao-Rui Yan; J. Microbiol. 2019;57(8):655-660. Published online June 11, 2019; DOI: https://doi.org/10.1007/s12275-019-8627-4

270 View
0 Download
3 Web of Science
4 Crossref

Abstract PDF

A Gram-negative, aerobic, short-rod-shaped, motile (with a terminal flagellum), non-spore-forming bacterium, designated strain 85T, was isolated from a surface-sterilized bark of Sonneratia caseolaris collected from Qinzhou in Guangxi, China and was analyzed using a polyphasic approach to determine its taxonomic position. Strain 85T grew optimally in the presence of 1–2% (w/v) NaCl at 30°C and pH 6.0–7.0. Phylogenetic analysis based on 16S rRNA gene sequence suggested that strain 85T belonged to the genus Fulvimarina and shared the highest 16S rRNA gene sequence similarity with Fulvimarina pelagi HTCC2506T (96.16%). The cell-wall peptidoglycan contained meso-diaminopimelic acid and ubiquinone Q-10 was the predominant respiratory lipoquinone. The polar lipids comprised diphosphatidylglycerol, phosphatidylglycerol, phosphatidylethanolamine, phosphatidylcholine, an unidentified amino lipid, three unidentified phospholipids and six unidentified lipids. The major fatty acid was C18:1 ω7c. The DNA G+C content of strain 85T was 65.4 mol%, and the average nucleotide identity and estimated DDH values between strain 85T and the type strain of Fulvimarina pelagi HTCC2506T were 77.3% and 21.7%, respectively. Based on the phylogenetic, phenotypic, and chemotaxonomic analyses, strain 85T should be considered as a novel species of the genus Fulvimarina with the proposed name Fulvimarina endophytica sp. nov., and its type strain is 85T (= KCTC 62717T = CGMCC 1.13665T).

Citations

Citations to this article as recorded by

Description and genomic characterization of Mangrovibrevibacter kandeliae gen. nov. sp. nov., a novel carotenoid-producing endophytic bacterium isolated from branch of mangrove plants
Chengshao Zan, Zhouqing Zheng, Xiaohui Chen, Mingsheng Chen, Feina Li, Li Tuo
Antonie van Leeuwenhoek.2025;[Epub] CrossRef
Fulvimarina uroteuthidis sp. nov., isolated from a marine invertebrate and Uroteuthis (Photololigo) edulis
Yea-Lin Moon, Kyung Hyun Kim, Jin-Sook Park
International Journal of Systematic and Evolutionary Microbiology .2025;[Epub] CrossRef
Bacterial communities vary across populations and tissue type in red mangroves (Rhizophora mangle, Rhizophoraceae) along an expanding front
Brendan P Scherer, Olivia U Mason, Austin R Mast
FEMS Microbiology Ecology.2022;[Epub] CrossRef
List of new names and new combinations previously effectively, but not validly, published
Aharon Oren, George Garrity
International Journal of Systematic and Evolutionary Microbiology .2020; 70(3): 1443. CrossRef

Arthrobacter dokdonellae sp. nov., isolated from a plant of the genus Campanula: Hyeon-Woo Koh , Myung-Suk Kang , Ki-Eun Lee , Eun-Young Lee , Hongik Kim , Soo-Je Park; J. Microbiol. 2019;57(9):732-737. Published online May 11, 2019; DOI: https://doi.org/10.1007/s12275-019-8540-x

230 View
0 Download
5 Web of Science
4 Crossref

Abstract PDF

A Gram-stain-positive, oxidase- and catalase-positive, motile, aerobic, and rod-shaped bacterial strain, designated as DCT-5T, was isolated from a native plant belonging to the genus Campanula at Dokdo island, Republic of Korea. Growth of the strain DCT-5T was observed at 15–37°C (optimum 30°C) on R2A broth, pH 6.0–8.0 (optimum 7.0), and 0–5% (w/v) NaCl concentration (optimum 0%). The 16S rRNA gene sequence analysis revealed that strain DCT-5T was most closely related to Arthrobacter silviterrae KIS14-16T, Arthrobacter livingstonensis LI2T, Arthrobacter stackebrandtii CCM 2783T, Arthrobacter cryoconiti Cr6-08T, Arthrobacter ramosus CCM 1646T, and Arthrobacter psychrochitiniphilus GP3T with pairwise sequence similarities of 98.76%, 97.47%, 97.25%, 97.11%, 97.11%, and 97.00%, respectively. The DNA G+C content of strain DCT-5T was 64.7 mol%, and its DNA–DNA relatedness values with A. silviterrae KIS14-16T, A. livingstonensis LI2T, A. stackebrandtii CCM 2783T, A. psychrochitiniphilus GP3T, A. ramosus CCM 1646T, and A. cryoconiti Cr6-08T were 32.57 ± 2.02%, 28.75 ± 0.88%, 31.93 ± 1.15%, 34.73 ± 1.86%, 29.12 ± 1.56%, and 27.23 ± 0.88%, respectively. The major quinone was MK-9(H2) and major fatty acids were anteiso-C15:0, anteiso-C17:0, iso-C15:0, and iso-C16:0. The polar lipids were diphosphatidylglycerol (DPG), phosphatidylglycerol (PG), phosphatidylinositol (PI), unidentified glycolipid (GL), two unidentified aminophospholipids (APLs), and three unidentified lipids (Ls). The peptidoglycan type was A3α. On the basis of phenotypic, phylogenetic, genotypic, and chemotaxonomic characteristics, strain DCT-5T represents a novel species of the genus Arthrobacter, for which the name Arthrobacter dokdonellae sp. nov. is proposed. The type strain is DCT-5T (= KCTC 49189T = LMG 31284T).

Citations

Citations to this article as recorded by

Biodegradation of dimethachlon by Arthrobacter sp. K5: Mechanistic insights and ecological implications
Zhenyu Qian, Yingpei Wang, Peicheng Lu, Minghui Wu, Haipeng Xie, Xiangyi Kong, Xiaoyan Wu, Shunli Hu
Journal of Environmental Chemical Engineering.2024; 12(6): 114473. CrossRef
Microbial adaptation to different environmental conditions: molecular perspective of evolved genetic and cellular systems
Atif Khurshid Wani, Nahid Akhtar, Farooq Sher, Acacio Aparecido Navarrete, Juliana Heloisa Pinê Américo-Pinheiro
Archives of Microbiology.2022;[Epub] CrossRef
Arthrobacter sunyaminii sp. nov. and Arthrobacter jiangjiafuii sp. nov., new members in the genus Arthrobacter
Gui Zhang, Jing Yang, Dong Jin, Xin-He Lai, Shan Lu, Zhihong Ren, Tian Qin, Liyun Liu, Ji Pu, Yue Liu, Lin Ye, Juan Zhou, Xianglian Lv, Yuanmeihui Tao, Jianguo Xu
International Journal of Systematic and Evolutionary Microbiology .2022;[Epub] CrossRef
Genotype to ecotype in niche environments: adaptation of Arthrobacter to carbon availability and environmental conditions
Sara Gushgari-Doyle, Lauren M Lui, Torben N Nielsen, Xiaoqin Wu, Ria G Malana, Andrew J Hendrickson, Heloise Carion, Farris L Poole, Michael W W Adams, Adam P Arkin, Romy Chakraborty
ISME Communications.2022;[Epub] CrossRef

Edaphovirga cremea gen. nov., sp. nov., isolated from the rhizospheric soil of Codonopsis clematidea: Jin-Yan Xue , Meng-Yue Zhang , Yu Zhang , Juan Cheng , Li-Cheng Liu , Ying-Ying Wu , Tian-Yuan Zhang , Yi-Xuan Zhang; J. Microbiol. 2019;57(5):337-342. Published online February 26, 2019; DOI: https://doi.org/10.1007/s12275-019-8408-0

243 View
0 Download
1 Crossref

Abstract PDF

A Gram-negative, facultatively anaerobic, non-motile, nonspore- forming, coccoid or rod-shaped and creamy-pigmented bacterium, designated SYP-B2100T, was isolated from the rhizospheric soil of Codonopsis clematidea in the Xinjiang Uygur Autonomous Region, China. The optimal growth occurred at 28°C, pH 5.0, in the absence of NaCl. The cells tested positive in catalase and methyl red tests but negative in oxidase, urease, gelatinase, milk coagulation, and peptonisation, H2S production, nitrate reduction, and Voges-Proskauer tests. The major isoprenoid quinone was ubiquinone-8 (Q-8). The major cellular fatty acids were C16:0 and summed feature 8. The polar lipids consisted of diphosphatidylglycerol, phosphatidylethanolamine, and phosphatidylglycerol. The 16S rRNA gene sequence of strain SYP-B2100T was the most similar to that of Rahnella inusitata DSM 30078T (96.9%) within the family Enterobacteriaceae. The genomic DNA G+C content of strain SYP-B2100T was 50.3 mol%. The combined data from the phylogenetic, morphological, physiological, biochemical, and chemotaxonomic analyses presented in this study support the conclusion that strain SYP-B2100T represents a novel species of a new genus, for which the name Edaphovirga cremea gen. nov., sp. nov. is proposed; the type strain is SYPB2100T (= CGMCC 1.5857T = DSM 105170T = KCTC 62024T).

Citations

Citations to this article as recorded by

Jejubacter calystegiae gen. nov., sp. nov., moderately halophilic, a new member of the family Enterobacteriaceae, isolated from beach morning glory
Lingmin Jiang, Dexin Wang, Jung-Sook Lee, Dae-Hyuk Kim, Jae Cheol Jeong, Cha Young Kim, Suk Weon Kim, Jiyoung Lee
Journal of Microbiology.2020; 58(5): 357. CrossRef

Chryseolinea soli sp. nov., isolated from soil: Shin Ae Lee , Yiseul Kim , Mee-Kyung Sang , Jaekyeong Song , Soon-Wo Kwon , Hang-Yeon Weon; J. Microbiol. 2019;57(2):122-126. Published online January 31, 2019; DOI: https://doi.org/10.1007/s12275-019-8562-4

284 View
0 Download
18 Web of Science
19 Crossref

Abstract PDF

A yellow-colored bacterium with gliding motility, strain KIS68-18T, was isolated from a soil sample at Bijin Island in Tongyeong city, Republic of Korea. The cells were strictly aerobic, Gram-staining-negative, non-spore-forming, and rod-shaped. The strain grew at the range of 10–35°C (optimum, 25–30°C), pH 5.5–8.0 (optimum, 6.0–7.5), and 0–0.5% (w/v) NaCl. A phylogenetic analysis based on 16S rRNA gene sequences revealed that strain KIS68-18T was closely related to Chryseolinea serpens DSM 24574T (98.9%) and had low sequence similarities (below 92.6%) with other members of the family ‘Cytophagaceae’ in the phylum Bacteroidetes. The major respiratory quinone system was MK-7 and the predominant cellular fatty acids were C16:1 ω5c (38.8%), iso-C15:0 (18.5%), and summed feature 3 (C16:1 ω7c and/or C16:1 ω6c, 10.6%). The polar lipids consisted of phosphatidylethanolamine, one unidentified phospholipid, three unidentified aminophospholipids, two unidentified aminolipids, and five unidentified lipids. The DNA G + C content was 50.9%. Based on the phylogenetic, physiological, and chemotaxonomic data, stain KIS68-18T represents a novel species of the genus Chryseolinea, for which the name Chryseolinea soli sp. nov. is proposed. The type strain of Chryseolinea soli is KIS68-18T (= KACC 17327T = NBRC 113100T).

Citations

Citations to this article as recorded by

Rhizosphere bacteriome assemblage following initial fluctuations is delayed with nitrogen additions in tomato seedlings
Mary M. Dixon, Carley R. Rohrbaugh, Daniel K. Manter, Jorge A. Delgado, Jorge M. Vivanco
Biology and Fertility of Soils.2025; 61(2): 233. CrossRef
Assessment of temperature dynamics during methane oxidation in a pilot scale compost biofilter
Tania L. Gómez-Borraz, Yuly Vanessa Torres-Arévalo, Yovany Cuetero-Martínez, Armando González-Sánchez, Adalberto Noyola
Bioresource Technology.2025; 419: 132097. CrossRef
Microbiome re-assembly enhances manganese and ammonium co-removal in sand biofilters
Xin Zhao, Xuan Zhou, Bo Sun, Chuanjun Dai, Qing Guo, Dezhao Liu, Xiangyong Zheng, Min Zhao
Separation and Purification Technology.2025; 369: 132902. CrossRef
Solid vermicompost and its liquid derivative exhibit strong biocontrol properties against Myzus persicae aphids on sweet pepper
Mey Jerbi-Elayed, Stefan Brandl, Grégory Sempo, John Riviere, Deborah Lanterbecq, Marie Annet, Leidy Grawez Demoulin, Muriel Quinet, Stanley Lutts, Thierry Hance, François Renoz
Journal of Pest Science.2025;[Epub] CrossRef
Poultry litter biochar soil amendment affects microbial community structures, promotes phosphorus cycling and growth of barley (Hordeum vulgare)
Lea Deinert, Shakhawat Hossen, Israel Ikoyi, Witold Kwapinksi, Matthias Noll, Achim Schmalenberger
European Journal of Soil Biology.2024; 120: 103591. CrossRef
Uptake and Metabolic Conversion of Exogenous Phosphatidylcholines Depending on Their Acyl Chain Structure in Arabidopsis thaliana
Ekaterina R. Kotlova, Svetlana V. Senik, Gregory A. Pozhvanov, Ilya A. Prokopiev, Ivan A. Boldyrev, Bairta S. Manzhieva, Ekaterina Ya. Amigud, Roman K. Puzanskiy, Anna A. Khakulova, Evgeny B. Serebryakov
International Journal of Molecular Sciences.2023; 25(1): 89. CrossRef
A nostoxanthin-producing bacterium, Sphingomonas nostoxanthinifaciens sp. nov., alleviates the salt stress of Arabidopsis seedlings by scavenging of reactive oxygen species
Lingmin Jiang, Jiyoon Seo, Yuxin Peng, Doeun Jeon, Ju Huck Lee, Cha Young Kim, Jiyoung Lee
Frontiers in Microbiology.2023;[Epub] CrossRef
Simulatenous evaluation of composting experiments and metagenome analyses to illuminate the effect of Streptomyces spp. on organic matter degradation
Fadime Ozdemir Kocak, Saadet Gizem Ertekin Tanir, Ayten Kumas Cetin, Levent Degirmenci
World Journal of Microbiology and Biotechnology.2023;[Epub] CrossRef
Sphingomonas abietis sp. nov., an Endophytic Bacterium Isolated from Korean Fir
Lingmin Jiang, Hanna Choe, Yuxin Peng, Doeun Jeon, Donghyun Cho, Yue Jiang, Ju Huck Lee, Cha Young Kim, Jiyoung Lee
Journal of Microbiology and Biotechnology.2023; 33(10): 1292. CrossRef
The Effect of Long-Term Agricultural Use on the Bacterial Microbiota of Chernozems of the Forest-Steppe Zone
Konstantin S. Boyarshin, Valeria V. Adamova, Zheng Wentao, Olga Y. Obuhova, Marina V. Kolkova, Vitaliy A. Nesterenko, Olga S. Bespalova, Violetta V. Kluyeva, Kristina A. Degtyareva, Yulia N. Kurkina, Olesia A. Makanina, Irina V. Batlutskaya
Diversity.2023; 15(2): 191. CrossRef
Chryseolinea lacunae sp. nov. and Piscinibacter lacus sp. nov. Isolated from Artificial Pond Water
Inhyup Kim, Geeta Chhetri, Jiyoun Kim, Yoonseop So, Taegun Seo
Current Microbiology.2023;[Epub] CrossRef
Impact of sheep wool residues as soil amendments on olive beneficial symbionts and bacterial diversity
Michela Palla, Alessandra Turrini, Caterina Cristani, Laura Bonora, David Pellegrini, Jacopo Primicerio, Arianna Grassi, Filip Hilaj, Manuela Giovannetti, Monica Agnolucci
Bioresources and Bioprocessing.2022;[Epub] CrossRef
Parachryseolinea silvisoli gen. nov., sp. nov., isolated from forest soil, and reclassification of Chryseolinea flava as Pseudochryseolinea flava gen. nov., comb. nov.
Chunling Wang, Yingying Lv, Anzhang Li, Qing Yao, Honghui Zhu
International Journal of Systematic and Evolutionary Microbiology .2022;[Epub] CrossRef
Draft Genome Sequence of Cytophagales sp. Strain WSM2-2, Isolated from Garden Soil
Masataka Aoki, Mamoru Oshiki, Mizuki Iwagaki, Masashi Hatamoto, Takashi Yamaguchi, Nobuo Araki, J. Cameron Thrash
Microbiology Resource Announcements.2021;[Epub] CrossRef
Effects of Different Continuous Cropping Years on Bacterial Community and Diversity of Cucumber Rhizosphere Soil in Solar-Greenhouse
Yang Li, Jingliang Chi, Jing Ao, Xiaomei Gao, Xiaohui Liu, Yulu Sun, Weiwei Zhu
Current Microbiology.2021; 78(6): 2380. CrossRef
Pyomelanin-Producing Brevundimonas vitisensis sp. nov., Isolated From Grape (Vitis vinifera L.)
Lingmin Jiang, Doeun Jeon, Jueun Kim, Chul Won Lee, Yuxin Peng, Jiyoon Seo, Ju Huck Lee, Jin Hyub Paik, Cha Young Kim, Jiyoung Lee
Frontiers in Microbiology.2021;[Epub] CrossRef
Saccharibacillus brassicae sp. nov., an endophytic bacterium isolated from kimchi cabbage (Brassica rapa subsp. pekinensis) seeds
Lingmin Jiang, Chan Ju Lim, Song-Gun Kim, Jae Cheol Jeong, Cha Young Kim, Dae-Hyuk Kim, Suk Weon Kim, Jiyoung Lee
Journal of Microbiology.2020; 58(1): 24. CrossRef
Jejubacter calystegiae gen. nov., sp. nov., moderately halophilic, a new member of the family Enterobacteriaceae, isolated from beach morning glory
Lingmin Jiang, Dexin Wang, Jung-Sook Lee, Dae-Hyuk Kim, Jae Cheol Jeong, Cha Young Kim, Suk Weon Kim, Jiyoung Lee
Journal of Microbiology.2020; 58(5): 357. CrossRef
Neobacillus endophyticus sp. nov., an endophytic bacterium isolated from Selaginella involvens roots
Lingmin Jiang, Myoung Hui Lee, Jae Cheol Jeong, Dae-Hyuk Kim, Cha Young Kim, Suk Weon Kim, Jiyoung Lee
International Journal of Systematic and Evolutionary Microbiology .2019;[Epub] CrossRef

Paraburkholderia dokdonella sp. nov., isolated from a plant from the genus Campanula: Man-Young Jung , Myung-Suk Kang , Ki-Eun Lee , Eun-Young Lee , Soo-Je Park; J. Microbiol. 2019;57(2):107-112. Published online November 19, 2018; DOI: https://doi.org/10.1007/s12275-019-8500-5

240 View
1 Download
9 Web of Science
9 Crossref

Abstract PDF

The novel Gram-stain-negative, rod-shaped, aerobic bacterial strain DCR-13T was isolated from a native plant belonging to the genus Campanula on Dokdo, an island in the Republic of Korea. Comparative analysis of the 16S rRNA gene sequence indicated that this strain is closely related to Paraburkholderia peleae PP52-1T (98.43% 16S rRNA gene sequence similarity), Paraburkholderia oxyphila NBRC 105797T (98.42%), Paraburkholderia sacchari IPT 101T (98.28%), Paraburkholderia mimosarum NBRC 106338T (97.80%), Paraburkholderia denitrificans KIS30-44T (97.46%), and Paraburkholderia paradise WAT (97.45%). This analysis of the 16S rRNA gene sequence also suggested that DCR-13T and the six closely related strains formed a clade within the genus Paraburkholderia, but that DCR-13T was clearly separated from the established species. DCR-13T had ubiquinone 8 as its predominant respiratory quinone, and its genomic DNA G + C content was 63.9 mol%. The isolated strain grew at a pH of 6.0–8.0 (with an optimal pH of 6.5), 0–4% w/v NaCl (with an optimal level of 0%), and a temperature of 18–42°C (with an optimal temperature of 30°C). The predominant fatty acids were C16:0, summed feature 8 (C18:1 ω7c/C18:1 ω6c), C17:0 cyclo, C19:0 cyclo ω8c, summed feature 3 (C16:1 ω6c/C16:1 ω7c) and summed feature 2 (C12:0 aldehyde), and the major polar lipids were phosphatidylglycerol and phosphatidylethanolamine. On the basis of polyphasic evidence, it is proposed that strain DCR-13T (= KCTC 62811T = LMG 30889T) represents the type strain of a novel species, Paraburkholderia dokdonella sp. nov.

Citations

Citations to this article as recorded by

Bacterial nitrite production oxidizes Fe(II) bioremediating acidic abandoned coal mine drainage
Anna Vietmeier, Michelle Valkanas, Natalie Lamagna, Samuel Flett, Djuna Gulliver, Nancy Trun, John R. Spear
Applied and Environmental Microbiology.2025;[Epub] CrossRef
Genome-based taxonomy of Burkholderia sensu lato: Distinguishing closely related species
Evelise Bach, Camila Gazolla Volpiano, Fernando Hayashi Sant’Anna, Luciane Maria Pereira Passaglia
Genetics and Molecular Biology.2023;[Epub] CrossRef
Genome-based Reclassification of Paraburkholderia insulsa as a Later Heterotypic Synonym of Paraburkholderia fungorum and Proposal of Paraburkholderia terrae subsp. terrae subsp. nov. and Paraburkholderia terrae subsp. steynii subsp. nov.
Munusamy Madhaiyan, Shankar Sriram, Nedounsejian Kiruba, Venkatakrishnan Sivaraj Saravanan
Current Microbiology.2022;[Epub] CrossRef
Engineering of a newly isolated Bacillus tequilensis BL01 for poly-γ-glutamic acid production from citric acid
Dexin Wang, Xiaoping Fu, Dasen Zhou, Jiaqi Gao, Wenqin Bai
Microbial Cell Factories.2022;[Epub] CrossRef
The Hidden Genomic Diversity, Specialized Metabolite Capacity, and Revised Taxonomy of Burkholderia Sensu Lato
Alex J. Mullins, Eshwar Mahenthiralingam
Frontiers in Microbiology.2021;[Epub] CrossRef
The history and distribution of nodulating Paraburkholderia, a potential inoculum for Fynbos forage species
Chrizelle W. Beukes, Stephanus N. Venter, Emma T. Steenkamp
Grass and Forage Science.2021; 76(1): 10. CrossRef
International Committee on Systematics of Prokaryotes Subcommittee on the Taxonomy of Rhizobia and Agrobacteria Minutes of the closed meeting by videoconference, 17 July 2019
Philippe de Lajudie, J. Peter W. Young
International Journal of Systematic and Evolutionary Microbiology .2020; 70(5): 3563. CrossRef
Spontaneous formation and mechanism of anaerobic ammonium oxidation (anammox) bacteria in swine wastewater treatment system
Zhenzhong Pan, Ruizhi Dai, Jingsong Liao, Jih-Gaw Lin, Yiguo Hong, Jiayin Ling, Yanbin Xu, Yuxin Li, Jiaen Peng
International Biodeterioration & Biodegradation.2020; 154: 105058. CrossRef
A newly isolated Bacillus siamensis SB1001 for mass production of poly-γ-glutamic acid
Dexin Wang, Jin-Su Hwang, Dong-Ho Kim, Sungbeom Lee, Dae-Hyuk Kim, Min-Ho Joe
Process Biochemistry.2020; 92: 164. CrossRef

First
Prev
Page of 2
Next
Last

Search